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Crystal structure of the mariner Mos1 paired end complex with Mg
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2F7T PDB entry 2F7T
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 5.1168 75.9616
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 121.232 α = 90 b = 85.033 β = 98.93 c = 131.273 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray IMAGE PLATE MAR scanner 345 mm plate 2006-09-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.9535 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.5 30 98.8 0.17 9.5 3.9 33149 33149 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.5 3.7 99 0.665 2.5 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2F7T 3.5 29.87 32494 32494 1647 96.71 0.222 0.222 0.219 0.2189 0.279 0.2623 RANDOM 70.567
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.64 -4.04 3.54 -5.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.204 r_mcangle_it 33.639 r_mcbond_it 28.789 r_dihedral_angle_3_deg 19.474 r_dihedral_angle_4_deg 16.983 r_scangle_it 13.81 r_scbond_it 9.835 r_mcbond_other 8.489 r_dihedral_angle_1_deg 4.109 r_angle_refined_deg 1.997
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.204 r_mcangle_it 33.639 r_mcbond_it 28.789 r_dihedral_angle_3_deg 19.474 r_dihedral_angle_4_deg 16.983 r_scangle_it 13.81 r_scbond_it 9.835 r_mcbond_other 8.489 r_dihedral_angle_1_deg 4.109 r_angle_refined_deg 1.997 r_angle_other_deg 0.94 r_nbd_other 0.307 r_nbd_refined 0.294 r_symmetry_vdw_other 0.257 r_nbtor_refined 0.24 r_xyhbond_nbd_refined 0.24 r_symmetry_vdw_refined 0.233 r_symmetry_metal_ion_refined 0.196 r_symmetry_hbond_refined 0.189 r_xyhbond_nbd_other 0.13 r_nbtor_other 0.101 r_chiral_restr 0.091 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5614 Nucleic Acid Atoms 3258 Solvent Atoms 2 Heterogen Atoms 11
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling PHASER phasing DM phasing REFMAC refinement PDB_EXTRACT data extraction ADSC data collection