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CS-35 Fab Complex with Oligoarabinofuranosyl Hexasaccharide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1E4X 1E4X, 1F58 experimental model PDB 1F58 1E4X, 1F58
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.1 295 sodium citrate, magnesium chloride, TMAO, pH 7.1, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.62 53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 146.725 α = 90 b = 96.234 β = 102.35 c = 36.065 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2008-01-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.115872 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 40 94.5 0.07 0.07 10.8 3.3 29618 29618 -3 -3 20.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 74.6 0.223 0.223 3.4 2.1 4347
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1E4X, 1F58 2 34.69 29618 29618 1607 100 0.17248 0.17248 0.17006 0.1752 0.21692 RANDOM 27.76
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.3 0.4 -0.21 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.616 r_dihedral_angle_4_deg 13.808 r_dihedral_angle_3_deg 11.825 r_dihedral_angle_1_deg 5.899 r_scangle_it 4.633 r_scbond_it 3.325 r_mcangle_it 2.281 r_mcbond_it 1.561 r_angle_refined_deg 1.08 r_nbtor_refined 0.297
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.616 r_dihedral_angle_4_deg 13.808 r_dihedral_angle_3_deg 11.825 r_dihedral_angle_1_deg 5.899 r_scangle_it 4.633 r_scbond_it 3.325 r_mcangle_it 2.281 r_mcbond_it 1.561 r_angle_refined_deg 1.08 r_nbtor_refined 0.297 r_nbd_refined 0.175 r_symmetry_vdw_refined 0.172 r_symmetry_hbond_refined 0.124 r_xyhbond_nbd_refined 0.099 r_chiral_restr 0.065 r_bond_refined_d 0.007 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3340 Nucleic Acid Atoms Solvent Atoms 508 Heterogen Atoms 56
Software Software Software Name Purpose Blu-Ice data collection PHASER phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling