☰ Navigation Tabs
Human beta-glucuronidase at 1.7 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 277 10mM Tris-HCl pH 7.5, 15% v/v MPD, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.71 54.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.578 α = 90 b = 123.115 β = 90 c = 266.135 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD Bruker AXIOM 200 1998-06-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.0 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.67 20 88.4 0.103 11.182 316019
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.67 1.73 73.6 0.488 26041
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 19.9 304658 15434 90.66 0.205 0.203 0.211 0.24 RANDOM 15.528
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.47 0.04 -0.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.007 r_dihedral_angle_4_deg 17.811 r_dihedral_angle_3_deg 13.42 r_dihedral_angle_1_deg 6.397 r_scangle_it 2.034 r_scbond_it 1.359 r_angle_refined_deg 1.264 r_angle_other_deg 1.031 r_mcangle_it 0.944 r_mcbond_it 0.582
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.007 r_dihedral_angle_4_deg 17.811 r_dihedral_angle_3_deg 13.42 r_dihedral_angle_1_deg 6.397 r_scangle_it 2.034 r_scbond_it 1.359 r_angle_refined_deg 1.264 r_angle_other_deg 1.031 r_mcangle_it 0.944 r_mcbond_it 0.582 r_symmetry_vdw_refined 0.216 r_nbd_other 0.199 r_nbd_refined 0.197 r_symmetry_vdw_other 0.195 r_nbtor_refined 0.182 r_symmetry_hbond_refined 0.149 r_xyhbond_nbd_refined 0.144 r_mcbond_other 0.135 r_nbtor_other 0.086 r_chiral_restr 0.08 r_xyhbond_nbd_other 0.056 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 19858 Nucleic Acid Atoms Solvent Atoms 2807 Heterogen Atoms 572
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling AMoRE phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction HKL-2000 data scaling