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Crystal structure of 2-dehydropantoate 2-reductase FROM Geobacter metallireducens GS-15
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 100MM MES, PH 6.0, 20% PEG8000, 200MM CALCIUM ACETATE, 10% GLYCEROL, TEMPERATURE 294K, VAPOR DIFFUSION, SITTING DROP
Crystal Properties Matthews coefficient Solvent content 2.34 47.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.318 α = 90 b = 82.179 β = 90 c = 201.291 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD ADSC QUANTUM 315 MIRRORS 2008-10-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 99.4 0.14 4.4 3.7 45333 -5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.59 98.8 0.94 0.8 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.5 20 42815 1371 97.95 0.24428 0.2427 0.243 0.2918 0.2921 RANDOM 65.647
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.97 -4.35 8.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.283 r_dihedral_angle_3_deg 20.15 r_dihedral_angle_4_deg 15.157 r_scangle_it 11.922 r_scbond_it 8.789 r_dihedral_angle_1_deg 7.137 r_mcangle_it 5.907 r_mcbond_it 3.973 r_angle_refined_deg 1.233 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.283 r_dihedral_angle_3_deg 20.15 r_dihedral_angle_4_deg 15.157 r_scangle_it 11.922 r_scbond_it 8.789 r_dihedral_angle_1_deg 7.137 r_mcangle_it 5.907 r_mcbond_it 3.973 r_angle_refined_deg 1.233 r_nbtor_refined 0.302 r_xyhbond_nbd_refined 0.154 r_nbd_refined 0.131 r_symmetry_hbond_refined 0.109 r_symmetry_vdw_refined 0.105 r_chiral_restr 0.088 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9301 Nucleic Acid Atoms Solvent Atoms 7 Heterogen Atoms
Software Software Software Name Purpose RESOLVE model building REFMAC refinement DENZO data reduction HKL-2000 data scaling SHELXDE phasing RESOLVE phasing