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SANT domain of human DNA methyltransferase 1 associated protein 1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 291 20% PEG3350, 0.2M calcium chloride, 0.1M HEPES, pH 7.0, vapor diffusion, hanging drop, temperature 291K
Crystal Properties Matthews coefficient Solvent content 1.98 37.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.523 α = 90 b = 36.523 β = 90 c = 230.506 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 300 mm plate 2009-04-06 M SINGLE WAVELENGTH 2 1 x-ray 100 IMAGE PLATE MAR scanner 300 mm plate 2009-05-17 M SINGLE WAVELENGTH 3 1 x-ray 100 IMAGE PLATE MAR scanner 300 mm plate 2009-05-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-B 0.91987 APS 23-ID-B 2 SYNCHROTRON CLSI BEAMLINE 08ID-1 1.07221 CLSI 08ID-1 3 SYNCHROTRON CLSI BEAMLINE 08ID-1 1.00645 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2,3 1.8 40 96.8 0.079 44.467 17 9198
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.86 75.6 0.47 6.2 693
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 1.8 19.905 9080 433 97.04 0.225 0.223 0.2307 0.275 0.2909 RANDOM 17.685
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.121 0.06 0.121 -0.181
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.836 r_dihedral_angle_4_deg 17.197 r_dihedral_angle_3_deg 11.336 r_dihedral_angle_1_deg 6.521 r_scangle_it 4.439 r_scbond_it 2.762 r_mcangle_it 1.927 r_angle_refined_deg 1.455 r_mcbond_it 1.08 r_angle_other_deg 0.96
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.836 r_dihedral_angle_4_deg 17.197 r_dihedral_angle_3_deg 11.336 r_dihedral_angle_1_deg 6.521 r_scangle_it 4.439 r_scbond_it 2.762 r_mcangle_it 1.927 r_angle_refined_deg 1.455 r_mcbond_it 1.08 r_angle_other_deg 0.96 r_mcbond_other 0.302 r_chiral_restr 0.097 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 644 Nucleic Acid Atoms Solvent Atoms 37 Heterogen Atoms 6
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHELX phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction HKL-2000 data scaling