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Crystal structure of BT_1490 (NP_810393.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 1.50 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 277 0.2000M Ca(OAc)2, 20.0000% PEG-8000, 0.1M MES pH 6.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.15 42.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 31.21 α = 90.39 b = 62.087 β = 91.5 c = 68.555 γ = 97.34
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2009-04-16 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.97845 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 29.814 87.9 0.039 10.1 76979 -3 15.871
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 70.3 0.304 1.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.5 29.814 76816 3838 94 0.171 0.169 0.1768 0.195 0.2018 RANDOM 24.816
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.79 -0.03 -0.6 -1.35 -0.18 0.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.186 r_dihedral_angle_4_deg 15.284 r_dihedral_angle_3_deg 11.417 r_dihedral_angle_1_deg 5.428 r_scangle_it 2.566 r_mcangle_it 2.076 r_scbond_it 1.709 r_angle_refined_deg 1.486 r_mcbond_it 1.485 r_angle_other_deg 0.868
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.186 r_dihedral_angle_4_deg 15.284 r_dihedral_angle_3_deg 11.417 r_dihedral_angle_1_deg 5.428 r_scangle_it 2.566 r_mcangle_it 2.076 r_scbond_it 1.709 r_angle_refined_deg 1.486 r_mcbond_it 1.485 r_angle_other_deg 0.868 r_mcbond_other 0.382 r_symmetry_vdw_refined 0.333 r_symmetry_vdw_other 0.247 r_nbd_refined 0.236 r_nbd_other 0.194 r_nbtor_refined 0.188 r_xyhbond_nbd_refined 0.171 r_symmetry_hbond_refined 0.124 r_metal_ion_refined 0.11 r_chiral_restr 0.09 r_nbtor_other 0.085 r_bond_refined_d 0.015 r_symmetry_metal_ion_refined 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4205 Nucleic Acid Atoms Solvent Atoms 448 Heterogen Atoms 41
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing