☰ Navigation Tabs
Crystal Structure of Human p38alpha complexed with PH-797804
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 298 20-30% PEG3000, 10 mM CaCl2, 50 mM CHES, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.27 45.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.114 α = 90 b = 74.645 β = 90 c = 77.066 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 210 crystal monochromator 2002-08-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.0 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 50 100 0.053 0.053 38.7 6.9 27860 27860 -1.5 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.02 99.2 0.502 0.502 2.9 6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.95 34.24 26401 1416 99.53 0.21909 0.21727 0.216 0.2542 0.2519 RANDOM 32.867
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 -0.67 0.69
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.016 r_dihedral_angle_3_deg 15.802 r_dihedral_angle_4_deg 14.255 r_dihedral_angle_1_deg 5.513 r_scangle_it 2.437 r_scbond_it 1.608 r_angle_refined_deg 1.3 r_mcangle_it 1.255 r_angle_other_deg 0.926 r_mcbond_it 0.745
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.016 r_dihedral_angle_3_deg 15.802 r_dihedral_angle_4_deg 14.255 r_dihedral_angle_1_deg 5.513 r_scangle_it 2.437 r_scbond_it 1.608 r_angle_refined_deg 1.3 r_mcangle_it 1.255 r_angle_other_deg 0.926 r_mcbond_it 0.745 r_symmetry_vdw_refined 0.535 r_symmetry_vdw_other 0.287 r_nbd_refined 0.213 r_nbd_other 0.191 r_nbtor_refined 0.183 r_xyhbond_nbd_refined 0.154 r_mcbond_other 0.126 r_symmetry_hbond_refined 0.124 r_nbtor_other 0.087 r_chiral_restr 0.078 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2715 Nucleic Acid Atoms Solvent Atoms 203 Heterogen Atoms 52
Software Software Software Name Purpose ADSC data collection REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling REFMAC phasing