☰ Navigation Tabs
The X-ray crystal structure of RNA polymerase from Archaea
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1R9T PDB ENTRY 1R9T
Crystallization Crystal Properties Matthews coefficient Solvent content 3.01 59.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 125.82 α = 90 b = 201.235 β = 100.92 c = 196.05 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 1.5414
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.4 40 105621 105621
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1R9T 3.4 40 100295 5323 80.27 0.26922 0.26542 0.2639 0.34089 0.3372 RANDOM 78.871
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.43 -4.84 1.57 -3.83
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.635 r_dihedral_angle_3_deg 23.339 r_dihedral_angle_4_deg 18.865 r_dihedral_angle_1_deg 7.933 r_scangle_it 3.044 r_angle_refined_deg 1.612 r_scbond_it 1.58 r_mcangle_it 1.418 r_mcbond_it 0.743 r_chiral_restr 0.109
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.635 r_dihedral_angle_3_deg 23.339 r_dihedral_angle_4_deg 18.865 r_dihedral_angle_1_deg 7.933 r_scangle_it 3.044 r_angle_refined_deg 1.612 r_scbond_it 1.58 r_mcangle_it 1.418 r_mcbond_it 0.743 r_chiral_restr 0.109 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 53046 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement