☰ Navigation Tabs
Crystal Structure of Glutathione Transferase Pi Y108V Mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5GSS PDB ENTRY 5GSS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 298 267mM Calcium Acetate, 20% PEG8000, 100mM MES, pH6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.56 51.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.1 α = 90 b = 90.3 β = 98.2 c = 68.9 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2008-09-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.96 Australian Synchrotron MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.74 100 98.3 0.06 22.37 7.3 47590 -3 24.854
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.74 1.84 89.8 0.3 4.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 5GSS 1.8 42.11 43129 2248 99.72 0.17 0.17 0.17 0.21 0.2031 RANDOM 19.247
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.18 -0.05 -0.07 -0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.673 r_dihedral_angle_4_deg 15.818 r_dihedral_angle_3_deg 12.956 r_dihedral_angle_1_deg 5.17 r_scangle_it 3.04 r_scbond_it 1.998 r_angle_refined_deg 1.32 r_mcangle_it 1.235 r_mcbond_it 0.848 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.673 r_dihedral_angle_4_deg 15.818 r_dihedral_angle_3_deg 12.956 r_dihedral_angle_1_deg 5.17 r_scangle_it 3.04 r_scbond_it 1.998 r_angle_refined_deg 1.32 r_mcangle_it 1.235 r_mcbond_it 0.848 r_nbtor_refined 0.307 r_symmetry_vdw_refined 0.206 r_nbd_refined 0.198 r_symmetry_hbond_refined 0.183 r_xyhbond_nbd_refined 0.131 r_metal_ion_refined 0.099 r_chiral_restr 0.088 r_bond_refined_d 0.013 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3260 Nucleic Acid Atoms Solvent Atoms 490 Heterogen Atoms 41
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction PHASER phasing