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Crystal structure of serine protease of Aeromonas sobria
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9.5 277 10% PEG 3000, 1M CHES pH9.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.11 41.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.82 α = 90 b = 112.056 β = 110.75 c = 51.881 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2003-10-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.00 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 55.99 98.5 0.059 15.5 3.7 62492 61518 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.71 91.2 0.194 3.2 5762
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 1.65 43.02 59296 3172 98.66 0.16999 0.16828 0.1777 0.2018 0.2094 RANDOM 9.955
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.94 -1.98 -1.97 1.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.387 r_scangle_it 3.34 r_scbond_it 2.208 r_angle_refined_deg 1.571 r_mcangle_it 1.212 r_angle_other_deg 0.929 r_mcbond_it 0.727 r_symmetry_vdw_refined 0.292 r_symmetry_vdw_other 0.279 r_nbd_other 0.261
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.387 r_scangle_it 3.34 r_scbond_it 2.208 r_angle_refined_deg 1.571 r_mcangle_it 1.212 r_angle_other_deg 0.929 r_mcbond_it 0.727 r_symmetry_vdw_refined 0.292 r_symmetry_vdw_other 0.279 r_nbd_other 0.261 r_symmetry_hbond_refined 0.249 r_nbd_refined 0.238 r_xyhbond_nbd_refined 0.165 r_chiral_restr 0.11 r_nbtor_other 0.086 r_metal_ion_refined 0.075 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4458 Nucleic Acid Atoms Solvent Atoms 700 Heterogen Atoms 3
Software Software Software Name Purpose HKL-2000 data collection SOLVE phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling