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Crystal structure of the carboxy-terminal domain of HSP90 from Leishmania major, LmjF33.0312
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1USU PDB ENTRY 1USU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 2.4 M Ammonium Sulfate
0.1 M Citric Acid pH 5.5
2 mM ATP, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.32 62.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 169.241 α = 90 b = 169.241 β = 90 c = 83.317 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2009-04-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C .97944 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 100 0.133 0.128 27.619 18 25015 25015 69.776
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.59 100 0.924 4.3 18.4 2448
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1USU 2.5 50 25064 24854 1268 99.16 0.216 0.216 0.213 0.2176 0.276 0.2766 RANDOM 30.611
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.74 -0.87 -1.74 2.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.429 r_dihedral_angle_3_deg 18.957 r_dihedral_angle_4_deg 18.845 r_dihedral_angle_1_deg 5.375 r_scangle_it 2.618 r_scbond_it 1.54 r_angle_refined_deg 1.178 r_mcangle_it 0.962 r_mcbond_it 0.493 r_chiral_restr 0.084
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.429 r_dihedral_angle_3_deg 18.957 r_dihedral_angle_4_deg 18.845 r_dihedral_angle_1_deg 5.375 r_scangle_it 2.618 r_scbond_it 1.54 r_angle_refined_deg 1.178 r_mcangle_it 0.962 r_mcbond_it 0.493 r_chiral_restr 0.084 r_bond_refined_d 0.01 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3072 Nucleic Acid Atoms Solvent Atoms 88 Heterogen Atoms 10
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection