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Minor Editosome-Associated TUTase 1 with bound UTP and Mg
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8 291 0.2M lithium acetate, 25% PEG 3350, 0.5mM UTP, 10mM MgCl2, pH 8.0, vapor diffusion, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.14 42.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.093 α = 90 b = 103.024 β = 111.01 c = 63.041 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2009-03-04 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837, 0.97876, 0.97935 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 99.6 0.092 21.66 3.8 67571
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 98.7 0.48 3.5 6724
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.3 33.71 34964 1651 100 0.2 0.198 0.1995 0.248 0.2491 RANDOM 29.177
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.27 2.92 -2.31 2.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.813 r_dihedral_angle_4_deg 19.105 r_dihedral_angle_3_deg 18.965 r_dihedral_angle_1_deg 5.636 r_scangle_it 4.201 r_scbond_it 2.494 r_mcangle_it 1.622 r_angle_refined_deg 1.493 r_mcbond_it 0.812 r_chiral_restr 0.093
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.813 r_dihedral_angle_4_deg 19.105 r_dihedral_angle_3_deg 18.965 r_dihedral_angle_1_deg 5.636 r_scangle_it 4.201 r_scbond_it 2.494 r_mcangle_it 1.622 r_angle_refined_deg 1.493 r_mcbond_it 0.812 r_chiral_restr 0.093 r_bond_refined_d 0.014 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6182 Nucleic Acid Atoms Solvent Atoms 170 Heterogen Atoms 60
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction Blu-Ice data collection HKL-2000 data reduction