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Structure of human Plk1-PBD in complex with PLHSpT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop 298 0.2 M di potassium phosphate, 20% w/v PEG 3350, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.26 45.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.2 α = 90 b = 65.8 β = 90 c = 104.1 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2007-08-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.00 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.57 50 82.6 0.051 22.583 4.4 28597
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.57 1.63 28.9 0.614 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.77 50 22482 1020 96.6 0.20607 0.2046 0.1997 0.23737 0.2314 RANDOM 33.621
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.88 -0.49 -1.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.478 r_dihedral_angle_4_deg 21.237 r_dihedral_angle_3_deg 15.807 r_dihedral_angle_1_deg 6.414 r_scangle_it 3.887 r_scbond_it 2.814 r_mcangle_it 2.011 r_angle_refined_deg 1.783 r_mcbond_it 1.219 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.478 r_dihedral_angle_4_deg 21.237 r_dihedral_angle_3_deg 15.807 r_dihedral_angle_1_deg 6.414 r_scangle_it 3.887 r_scbond_it 2.814 r_mcangle_it 2.011 r_angle_refined_deg 1.783 r_mcbond_it 1.219 r_nbtor_refined 0.309 r_nbd_refined 0.226 r_symmetry_vdw_refined 0.211 r_xyhbond_nbd_refined 0.164 r_symmetry_hbond_refined 0.143 r_chiral_restr 0.134 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1826 Nucleic Acid Atoms Solvent Atoms 122 Heterogen Atoms 16
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling