☰ Navigation Tabs
Structure of the membrane-binding domain of the Sec3 subunit of the Exocyst complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 293 0.1M Bicine, pH9.5, 14% PEG 5000 MME, 1mM DTT, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.22 44.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.697 α = 89.9 b = 68.486 β = 82.17 c = 68.036 γ = 71.79
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2008-10-20 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD MAR CCD 165 mm 2008-10-20 M MAD 3 1 x-ray 100 CCD MAR CCD 165 mm 2008-10-20 M MAD 4 1 x-ray 100 CCD MAR CCD 165 mm 2008-10-20 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-BM APS 17-BM 2 SYNCHROTRON APS BEAMLINE 17-BM APS 17-BM 3 SYNCHROTRON APS BEAMLINE 17-BM APS 17-BM 4 SYNCHROTRON APS BEAMLINE 17-BM APS 17-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2,3,4 2 50 93.6 0.069 0.053 24.6 10.1 46605 43622 41.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.07 62.7 0.52 0.52 1.5 3.8
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MAD 2 38.74 1.96 43624 43585 2203 93.5 0.204 0.202 0.2074 0.248
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.4722 0.6602 -0.9418 1.3535 -0.6486 1.1187
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 21.689 f_bond_d 0.025 f_angle_d f_chiral_restr f_plane_restr
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5357 Nucleic Acid Atoms Solvent Atoms 249 Heterogen Atoms 10
Software Software Software Name Purpose HKL-2000 data collection SnB phasing PHENIX refinement HKL-2000 data reduction HKL-2000 data scaling