☰ Navigation Tabs
Complex of the vesicular stomatitis virus nucleocapsid and the nucleocapsid-binding domain of the phosphoprotein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2GIC PDB ENTRY 2GIC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 295 7% PEG 4000, 0.25 M NaCl, and 0.1M citrate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 3.15 60.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 166.568 α = 90 b = 235.248 β = 90 c = 96.138 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2008-01-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 1.000 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.5 30 98.3 0.116 21.48 48185 48185
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.5 3.63 88.4 0.434 4.31
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2GIC 3.5 30 45229 45229 2443 98.54 0.25788 0.25788 0.25425 0.2478 0.32333 0.302 RANDOM 65.323
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 7.5 0.07 -7.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.325 r_dihedral_angle_3_deg 19.401 r_dihedral_angle_4_deg 15.227 r_dihedral_angle_1_deg 5.328 r_angle_refined_deg 1.194 r_scangle_it 0.741 r_scbond_it 0.442 r_mcangle_it 0.327 r_nbtor_refined 0.309 r_symmetry_hbond_refined 0.225
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.325 r_dihedral_angle_3_deg 19.401 r_dihedral_angle_4_deg 15.227 r_dihedral_angle_1_deg 5.328 r_angle_refined_deg 1.194 r_scangle_it 0.741 r_scbond_it 0.442 r_mcangle_it 0.327 r_nbtor_refined 0.309 r_symmetry_hbond_refined 0.225 r_nbd_refined 0.223 r_symmetry_vdw_refined 0.197 r_mcbond_it 0.183 r_xyhbond_nbd_refined 0.151 r_chiral_restr 0.081 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 19515 Nucleic Acid Atoms 900 Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose Blu-Ice data collection COMO phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling