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Crystal structure determination of Catechol 1,2-Dioxygenase from Rhodococcus opacus 1CP in complex with pyrogallol
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 296 39% PEG400, 0.1 M Hepes, 0.1 M magnesium chloride, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 296K
Crystal Properties Matthews coefficient Solvent content 2.05 40.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.17 α = 90 b = 37.8 β = 94.84 c = 75.04 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD OXFORD ONYX CCD 2007-04-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE OXFORD DIFFRACTION ENHANCE ULTRA 1.542
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 74.74 96.8 0.078 0.078 24.16 2.9 16453
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.1 84.2 0.392 0.392 3.37 1.89 1935
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2 20 15834 835 97.43 0.21749 0.21404 0.27836 0.2037 RANDOM 23.782
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.11 0.96 0.29 -0.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.938 r_dihedral_angle_4_deg 18.644 r_dihedral_angle_3_deg 14.896 r_dihedral_angle_1_deg 6.464 r_scangle_it 3.523 r_scbond_it 2.383 r_angle_refined_deg 1.661 r_mcangle_it 1.46 r_mcbond_it 0.833 r_chiral_restr 0.111
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.938 r_dihedral_angle_4_deg 18.644 r_dihedral_angle_3_deg 14.896 r_dihedral_angle_1_deg 6.464 r_scangle_it 3.523 r_scbond_it 2.383 r_angle_refined_deg 1.661 r_mcangle_it 1.46 r_mcbond_it 0.833 r_chiral_restr 0.111 r_bond_refined_d 0.016 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2002 Nucleic Acid Atoms Solvent Atoms 244 Heterogen Atoms 51
Software Software Software Name Purpose CrysalisPro data collection REFMAC refinement CrysalisPro data reduction CrysalisPro data scaling