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Nucleosome Assembly Protein 1 from Plasmodium knowlesi
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8 293 0.1 M NaCl, 0.1 M Tris, 32% PEG 3350, pH 8.0, vapor diffusion, temperature 293K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.895 α = 90 b = 38.259 β = 100.41 c = 80.477 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2008-05-22 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 1.0 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 79.06 95.6 0.068 16.551 3.4 5581
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9 77.2 0.214 2.7 439
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.8 30 5580 255 95.34 0.23 0.225 0.2266 0.328 0.3105 RANDOM 23.885
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.51 -1.93 3.3 -2.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.332 r_dihedral_angle_3_deg 18.118 r_dihedral_angle_4_deg 15.941 r_dihedral_angle_1_deg 7.376 r_scangle_it 1.502 r_angle_refined_deg 1.182 r_scbond_it 0.853 r_angle_other_deg 0.819 r_mcangle_it 0.659 r_mcbond_it 0.339
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.332 r_dihedral_angle_3_deg 18.118 r_dihedral_angle_4_deg 15.941 r_dihedral_angle_1_deg 7.376 r_scangle_it 1.502 r_angle_refined_deg 1.182 r_scbond_it 0.853 r_angle_other_deg 0.819 r_mcangle_it 0.659 r_mcbond_it 0.339 r_chiral_restr 0.065 r_mcbond_other 0.042 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1780 Nucleic Acid Atoms Solvent Atoms 13 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction BALBES phasing