☰ Navigation Tabs
The Crystal Structure of a CBS-domain Pair with Bound AMP from Klebsiella pneumoniae to 2.75A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 298 1.8 Magnesium sulfate, 0.1M Bis-tris propane, pH 7.0, vapor diffusion, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.6 65.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.395 α = 90 b = 101.395 β = 90 c = 107.745 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-05-01 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9794 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 98.1 0.092 7.7 5.5 9474
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 100 0.66 5.7 945
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.75 50 5517 270 96.79 0.225 0.222 0.2239 0.278 0.2866 RANDOM 27.833
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.49 -2.25 -4.49 6.74
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.805 r_dihedral_angle_3_deg 21.688 r_dihedral_angle_4_deg 20.852 r_dihedral_angle_1_deg 5.174 r_scangle_it 2.444 r_angle_refined_deg 1.406 r_scbond_it 1.388 r_mcangle_it 0.777 r_mcbond_it 0.398 r_chiral_restr 0.078
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.805 r_dihedral_angle_3_deg 21.688 r_dihedral_angle_4_deg 20.852 r_dihedral_angle_1_deg 5.174 r_scangle_it 2.444 r_angle_refined_deg 1.406 r_scbond_it 1.388 r_mcangle_it 0.777 r_mcbond_it 0.398 r_chiral_restr 0.078 r_bond_refined_d 0.01 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 972 Nucleic Acid Atoms Solvent Atoms 5 Heterogen Atoms 23
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction SBC-Collect data collection HKL-3000 data reduction HKL-3000 phasing SHELX phasing MLPHARE phasing DM phasing ARP/wARP model building Coot model building