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Cyclic residues in alpha/beta-peptide helix bundles: GCN4-pLI side chain sequence on an (alpha-alpha-beta) backbone with a cyclic beta-residue at position 10
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3C3G PDB ENTRY 3C3G
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 298 0.05 M cesium chloride, 0.1 M MES pH 6.5, 30% v/v Jeffamine M-600, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.13 42.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.108 α = 90 b = 39.108 β = 90 c = 93.257 γ = 90
Symmetry Space Group P 4 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD BRUKER SMART 6000 confocal mirrors 2008-02-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 24.33 99.2 0.061 19.6 7.2 4651
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.19 95 0.189 4.9 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3C3G 2.1 24.33 4425 215 99.34 0.19117 0.18899 0.1873 0.23369 0.2353 RANDOM 11.578
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.74 0.74 -1.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.493 r_dihedral_angle_3_deg 14.398 r_dihedral_angle_1_deg 6.694 r_scangle_it 4.017 r_scbond_it 2.3 r_angle_refined_deg 1.975 r_mcangle_it 1.417 r_angle_other_deg 1.388 r_mcbond_it 0.72 r_mcbond_other 0.186
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.493 r_dihedral_angle_3_deg 14.398 r_dihedral_angle_1_deg 6.694 r_scangle_it 4.017 r_scbond_it 2.3 r_angle_refined_deg 1.975 r_mcangle_it 1.417 r_angle_other_deg 1.388 r_mcbond_it 0.72 r_mcbond_other 0.186 r_chiral_restr 0.15 r_bond_refined_d 0.014 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 498 Nucleic Acid Atoms Solvent Atoms 96 Heterogen Atoms
Software Software Software Name Purpose PROTEUM PLUS data collection PHASER phasing REFMAC refinement PROTEUM PLUS data reduction PROTEUM PLUS data scaling