☰ Navigation Tabs
The crystal structure of the domain of putative two-component sensor histidine kinase protein from Sinorhizobium meliloti 1021
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 289 0.1M Sodium Acetate, 2.0M Sodium Formate, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.95 58.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.346 α = 90 b = 73.346 β = 90 c = 257.258 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r Si 111 channel 2008-07-11 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9794, 0.9796 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 61.66 99.8 0.105 30.2 25.7 10343 10322 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.873 99.1 0.84 3.38 24.5 774
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.8 61.66 10343 10322 523 99.8 0.20969 0.20674 0.2427 0.26018 0.2763 RANDOM 28.36
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.12 -1.06 -2.12 3.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.421 r_dihedral_angle_3_deg 22.727 r_dihedral_angle_4_deg 22.474 r_dihedral_angle_1_deg 10.738 r_scangle_it 4.101 r_scbond_it 2.418 r_angle_refined_deg 2.052 r_mcangle_it 1.793 r_angle_other_deg 1.128 r_mcbond_it 0.939
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.421 r_dihedral_angle_3_deg 22.727 r_dihedral_angle_4_deg 22.474 r_dihedral_angle_1_deg 10.738 r_scangle_it 4.101 r_scbond_it 2.418 r_angle_refined_deg 2.052 r_mcangle_it 1.793 r_angle_other_deg 1.128 r_mcbond_it 0.939 r_mcbond_other 0.141 r_chiral_restr 0.122 r_bond_refined_d 0.022 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2254 Nucleic Acid Atoms Solvent Atoms 12 Heterogen Atoms
Software Software Software Name Purpose SBC-Collect data collection SOLVE phasing REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling