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Structure of the C-terminal domain (MsrB) of Neisseria meningitidis PilB (reduced form)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 0,5M KH2PO4, 0.1M TRIS HCl pH 8 , VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.67 53.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.663 α = 90 b = 117.232 β = 90 c = 137.686 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2001-01-01 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A 0.9791, 0.9796, 0.9765 ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.82 30 97.2 0.045 12.7 62578
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.82 1.86 91.8 0.212 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.82 24.59 64358 59068 3002 91.78 0.2 0.188 0.185 0.1839 0.235 0.2339 RANDOM 24.031
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.608 r_dihedral_angle_4_deg 16.524 r_dihedral_angle_3_deg 13.676 r_dihedral_angle_1_deg 6.088 r_scangle_it 3.797 r_scbond_it 2.507 r_mcangle_it 1.437 r_angle_refined_deg 1.407 r_mcbond_it 0.831 r_nbtor_refined 0.313
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.608 r_dihedral_angle_4_deg 16.524 r_dihedral_angle_3_deg 13.676 r_dihedral_angle_1_deg 6.088 r_scangle_it 3.797 r_scbond_it 2.507 r_mcangle_it 1.437 r_angle_refined_deg 1.407 r_mcbond_it 0.831 r_nbtor_refined 0.313 r_symmetry_hbond_refined 0.257 r_symmetry_vdw_refined 0.21 r_nbd_refined 0.206 r_xyhbond_nbd_refined 0.169 r_chiral_restr 0.099 r_bond_refined_d 0.014 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4566 Nucleic Acid Atoms Solvent Atoms 747 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction Xnemo data collection DENZO data reduction SCALEPACK data scaling SnB phasing