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Crystal Structure of S. aureus Pyruvate Carboxylase T908A Mutant
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 20% PEG 3350, 0.2M ammonium tartrate, pH 7.5, vapor diffusion, sitting drop, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.86 57.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.532 α = 90 b = 257.154 β = 114.35 c = 130.318 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD r 2008-04-19 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X4C 0.981 NSLS X4C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 30 86.6 0.087 10.833 3 135160
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.7 2.8 77.5 0.437 3.1 12058
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.71 29.95 135012 6799 86.19 0.23 0.228 0.222 0.279 0.2705 RANDOM 70.362
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.67 1.36 -1.21 1.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.739 r_dihedral_angle_3_deg 18.147 r_dihedral_angle_4_deg 17.619 r_dihedral_angle_1_deg 5.195 r_scangle_it 1.145 r_angle_refined_deg 1.087 r_scbond_it 0.687 r_mcangle_it 0.522 r_nbtor_refined 0.305 r_mcbond_it 0.291
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.739 r_dihedral_angle_3_deg 18.147 r_dihedral_angle_4_deg 17.619 r_dihedral_angle_1_deg 5.195 r_scangle_it 1.145 r_angle_refined_deg 1.087 r_scbond_it 0.687 r_mcangle_it 0.522 r_nbtor_refined 0.305 r_mcbond_it 0.291 r_nbd_refined 0.201 r_symmetry_hbond_refined 0.187 r_symmetry_vdw_refined 0.186 r_xyhbond_nbd_refined 0.137 r_chiral_restr 0.074 r_bond_refined_d 0.007 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 34236 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 91
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling COMO phasing REFMAC refinement PDB_EXTRACT data extraction