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Crystal Structure of S. aureus Pyruvate Carboxylase A610T Mutant
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 20% PEG 3350, 0.2M ammonium tartrate, pH 7.5, vapor diffusion, sitting drop, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.87 57.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.566 α = 90 b = 256.763 β = 109.65 c = 126.485 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 On Huber Eulerian cradle 2008-04-19 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X4A 0.98 NSLS X4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 30 92.5 0.075 12.217 2.6 124542
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.9 3 84 0.422 2.5 11239
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.9 30 118525 5983 92.75 0.222 0.22 0.2126 0.266 0.2566 RANDOM 62.163
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.16 0.96 1.22 0.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.46 r_dihedral_angle_3_deg 16.915 r_dihedral_angle_4_deg 16.677 r_dihedral_angle_1_deg 4.531 r_angle_refined_deg 0.956 r_scangle_it 0.727 r_scbond_it 0.415 r_mcangle_it 0.375 r_nbtor_refined 0.301 r_mcbond_it 0.206
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.46 r_dihedral_angle_3_deg 16.915 r_dihedral_angle_4_deg 16.677 r_dihedral_angle_1_deg 4.531 r_angle_refined_deg 0.956 r_scangle_it 0.727 r_scbond_it 0.415 r_mcangle_it 0.375 r_nbtor_refined 0.301 r_mcbond_it 0.206 r_nbd_refined 0.183 r_symmetry_vdw_refined 0.178 r_xyhbond_nbd_refined 0.118 r_symmetry_hbond_refined 0.109 r_chiral_restr 0.064 r_bond_refined_d 0.006 r_gen_planes_refined 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 33726 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 118
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling COMO phasing REFMAC refinement PDB_EXTRACT data extraction