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Binary and ternary crystal structures of a novel inhibitor of 17 beta-HSD type 1: a lead compound for breast cancer therapy
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 300 pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 300K
Crystal Properties Matthews coefficient Solvent content 2.32 47.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 123.2 α = 90 b = 44 β = 100.3 c = 60.8 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 277 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 19.94 0.037 21662
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2 19.4 20578 1084 100 0.20414 0.20179 0.2108 0.24843 0.2501 RANDOM 30.978
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 -0.04 0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.375 r_dihedral_angle_3_deg 19.524 r_dihedral_angle_4_deg 17.43 r_dihedral_angle_1_deg 6.664 r_scangle_it 4.776 r_scbond_it 3.265 r_angle_refined_deg 2.135 r_mcangle_it 2.082 r_mcbond_it 1.3 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.375 r_dihedral_angle_3_deg 19.524 r_dihedral_angle_4_deg 17.43 r_dihedral_angle_1_deg 6.664 r_scangle_it 4.776 r_scbond_it 3.265 r_angle_refined_deg 2.135 r_mcangle_it 2.082 r_mcbond_it 1.3 r_nbtor_refined 0.304 r_symmetry_vdw_refined 0.295 r_nbd_refined 0.249 r_xyhbond_nbd_refined 0.234 r_symmetry_hbond_refined 0.17 r_chiral_restr 0.135 r_bond_refined_d 0.022 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2177 Nucleic Acid Atoms Solvent Atoms 94 Heterogen Atoms 78
Software Software Software Name Purpose CrystalClear data collection REFMAC refinement XDS data reduction