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The Crystal Structure of the Tudor Domains from FXR2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 298 10 mg/ml protein in 20 mM Tris, pH 8.0, 200 mM
NaCl, 1 mM DTT; Hanging drop vapour diffusion,20-30% Peg 3350, 0.2M MgCl2,
Hepes 7.5., VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.24 45.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.563 α = 90 b = 54.676 β = 90 c = 70.171 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 2009-03-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97942 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.92 100 99 0.09 24.231 6.1 10551
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.92 1.96 87 0.648 2.5 456
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.92 43.11 10430 498 97.72 0.212 0.21 0.2096 0.25 0.2461 RANDOM 32.047
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.18 1.88 -0.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.756 r_dihedral_angle_4_deg 13.748 r_dihedral_angle_3_deg 13.308 r_dihedral_angle_1_deg 6.819 r_scangle_it 4.63 r_scbond_it 3.349 r_mcangle_it 2.321 r_angle_refined_deg 1.729 r_mcbond_it 1.525 r_nbtor_refined 0.314
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.756 r_dihedral_angle_4_deg 13.748 r_dihedral_angle_3_deg 13.308 r_dihedral_angle_1_deg 6.819 r_scangle_it 4.63 r_scbond_it 3.349 r_mcangle_it 2.321 r_angle_refined_deg 1.729 r_mcbond_it 1.525 r_nbtor_refined 0.314 r_nbd_refined 0.221 r_symmetry_vdw_refined 0.152 r_chiral_restr 0.135 r_xyhbond_nbd_refined 0.121 r_symmetry_hbond_refined 0.102 r_bond_refined_d 0.021 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 873 Nucleic Acid Atoms Solvent Atoms 63 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction