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Crystal structure of enoyl-CoA hydratase from Mycobacterium tuberculosis
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1DUB pdb entry 1DUB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 289 Wizard Full condition F6: 0.1 M Tris, 20% PEG 3000, 0.2 M CaCl2, crystal ID 208527F6, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.52 51.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 133.853 α = 90 b = 130.947 β = 90 c = 102.218 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 2009-04-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 1.0 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 93.6 97.5 0.083 21.8 7.1 80982
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 81.9 0.549 2.69 5.5 6722
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 1DUB 1.8 50 80847 4073 97.26 0.175 0.174 0.1808 0.192 0.1847 RANDOM 22.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.28 0.85 -0.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.494 r_dihedral_angle_4_deg 15.198 r_dihedral_angle_3_deg 11.553 r_dihedral_angle_1_deg 5.028 r_scangle_it 2.594 r_scbond_it 1.498 r_angle_refined_deg 1.056 r_mcangle_it 0.903 r_angle_other_deg 0.858 r_mcbond_it 0.474
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.494 r_dihedral_angle_4_deg 15.198 r_dihedral_angle_3_deg 11.553 r_dihedral_angle_1_deg 5.028 r_scangle_it 2.594 r_scbond_it 1.498 r_angle_refined_deg 1.056 r_mcangle_it 0.903 r_angle_other_deg 0.858 r_mcbond_it 0.474 r_mcbond_other 0.09 r_chiral_restr 0.062 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5637 Nucleic Acid Atoms Solvent Atoms 701 Heterogen Atoms 27
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction HKL-2000 data scaling