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Crystal structure of Putative calcium/calmodulin dependent protein kinase II association domain (NP_636218.1) from XANTHOMONAS CAMPESTRIS at 1.70 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 277 20.0000% PEG-1000, 0.1M TRIS pH 8.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.32 46.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.832 α = 90 b = 80.55 β = 95.59 c = 51.431 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2009-02-18 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.97901 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 29.488 97.9 0.074 0.074 6.464 3.2 33865 22.186
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.74 97.3 0.665 0.665 1.2 3.2 2496
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.7 29.488 33842 1695 97.62 0.18 0.179 0.1832 0.215 0.2193 RANDOM 25.146
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.21 0.97 -0.11 0.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.421 r_dihedral_angle_3_deg 13.031 r_dihedral_angle_4_deg 13.005 r_dihedral_angle_1_deg 7.056 r_scangle_it 6.291 r_scbond_it 4.993 r_mcangle_it 3.029 r_mcbond_it 2.202 r_angle_refined_deg 1.669 r_angle_other_deg 0.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.421 r_dihedral_angle_3_deg 13.031 r_dihedral_angle_4_deg 13.005 r_dihedral_angle_1_deg 7.056 r_scangle_it 6.291 r_scbond_it 4.993 r_mcangle_it 3.029 r_mcbond_it 2.202 r_angle_refined_deg 1.669 r_angle_other_deg 0.98 r_mcbond_other 0.578 r_symmetry_vdw_other 0.4 r_symmetry_vdw_refined 0.278 r_nbd_refined 0.26 r_nbd_other 0.212 r_symmetry_hbond_refined 0.179 r_nbtor_refined 0.177 r_xyhbond_nbd_refined 0.147 r_chiral_restr 0.097 r_nbtor_other 0.088 r_xyhbond_nbd_other 0.031 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2187 Nucleic Acid Atoms Solvent Atoms 251 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction autoSHARP phasing