3H4Q

Crystal structure of putative acetyltransferase (NP_371943.1) from STAPHYLOCOCCUS AUREUS MU50 at 2.50 A resolution


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5.9329332.5000% polyethylene glycol 600, 5.0000% polyethylene glycol 1000, 10.0000% Glycerol, 0.1M MES pH 5.93, Additive: 0.001 M acetyl Coenzyme A, NANODROP', VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
3.261.6

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 84.489α = 90
b = 84.489β = 90
c = 69.685γ = 120
Symmetry
Space GroupP 31 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 325 mm CCDFlat collimating mirror, toroid focusing mirror2009-01-16MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL9-20.91837,0.97949,0.97964SSRLBL9-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.527.66199.90.0560.0569.4915.41026271.685
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.52.561000.7790.77915.6732

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT2.527.6611024649299.910.220.2190.253RANDOM53.645
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.54-0.27-0.540.81
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.353
r_dihedral_angle_4_deg12.405
r_dihedral_angle_3_deg12.079
r_scangle_it5.357
r_scbond_it4.243
r_dihedral_angle_1_deg3.631
r_mcangle_it2.863
r_mcbond_it1.802
r_angle_refined_deg1.65
r_angle_other_deg1.044
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.353
r_dihedral_angle_4_deg12.405
r_dihedral_angle_3_deg12.079
r_scangle_it5.357
r_scbond_it4.243
r_dihedral_angle_1_deg3.631
r_mcangle_it2.863
r_mcbond_it1.802
r_angle_refined_deg1.65
r_angle_other_deg1.044
r_mcbond_other0.325
r_symmetry_vdw_other0.234
r_symmetry_hbond_refined0.224
r_nbd_refined0.21
r_nbtor_refined0.195
r_nbd_other0.175
r_symmetry_vdw_refined0.119
r_xyhbond_nbd_refined0.116
r_chiral_restr0.103
r_nbtor_other0.094
r_bond_refined_d0.012
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1120
Nucleic Acid Atoms
Solvent Atoms21
Heterogen Atoms26

Software

Software
Software NamePurpose
REFMACrefinement
PHENIXrefinement
SOLVEphasing
MolProbitymodel building
SCALAdata scaling
PDB_EXTRACTdata extraction
MOSFLMdata reduction