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Chimeric Glycosyltransferase for the generation of novel natural products
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1PN3 PDB ENTRY 1PN3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 300 0.1M Tris-HCL, 1.2-2M ammonium sulphate, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 300K
Crystal Properties Matthews coefficient Solvent content 2.9 57.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 111.48 α = 90 b = 129.83 β = 90 c = 67.44 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 130 mm 2007-12-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM16 0.98 ESRF BM16
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 29.92 99.9 0.074 7 119259 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.3 1.37 100 0.569 7 17244
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1PN3 1.3 29.25 2 143104 113256 5975 99.92 0.17 0.16481 0.16382 0.18383 0.1856 RANDOM 14.492
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.455 r_dihedral_angle_4_deg 17.021 r_dihedral_angle_3_deg 10.105 r_dihedral_angle_1_deg 5.149 r_scbond_it 2.653 r_scangle_it 2.59 r_rigid_bond_restr 2.532 r_sphericity_free 2.097 r_sphericity_bonded 1.898 r_angle_refined_deg 1.222
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.455 r_dihedral_angle_4_deg 17.021 r_dihedral_angle_3_deg 10.105 r_dihedral_angle_1_deg 5.149 r_scbond_it 2.653 r_scangle_it 2.59 r_rigid_bond_restr 2.532 r_sphericity_free 2.097 r_sphericity_bonded 1.898 r_angle_refined_deg 1.222 r_mcangle_it 1.083 r_mcbond_it 0.684 r_nbtor_refined 0.305 r_nbd_refined 0.19 r_symmetry_vdw_refined 0.141 r_symmetry_hbond_refined 0.128 r_xyhbond_nbd_refined 0.106 r_chiral_restr 0.073 r_bond_refined_d 0.006 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2862 Nucleic Acid Atoms Solvent Atoms 630 Heterogen Atoms 46
Software Software Software Name Purpose HKL-2000 data collection AMoRE phasing REFMAC refinement MOSFLM data reduction SCALA data scaling