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Drosophila Pumilio RNA binding domain (Puf domain)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.8 277 2.1M Ammonium sulfate, 100mM HEPES, 4% DMSO, 2mM DTT, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 94.58 α = 90 b = 94.58 β = 90 c = 229.27 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 315r 2000-06-01 M SINGLE WAVELENGTH 2 2 x-ray 110 CCD ADSC QUANTUM 315r 2000-06-01 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 1.1 NSLS X25 2 SYNCHROTRON NSLS BEAMLINE X25 1.009, 1.0084, 0.990 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.3 20 95.8 0.089 0.089 20.7 8.9 51334 49178 41.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.4 73.2 0.311 0.311 2.4 5 4917
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT none 2.3 19.78 49217 48553 2440 95.3 0.254 0.254 0.252 0.2522 0.298 0.3021 RANDOM 44.222
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.83 -0.41 -0.83 1.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.559 r_dihedral_angle_4_deg 22.685 r_dihedral_angle_3_deg 19.702 r_dihedral_angle_1_deg 7.366 r_scangle_it 5.908 r_scbond_it 4.016 r_angle_refined_deg 2.61 r_mcangle_it 2.443 r_mcbond_it 1.634 r_nbtor_refined 0.318
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.559 r_dihedral_angle_4_deg 22.685 r_dihedral_angle_3_deg 19.702 r_dihedral_angle_1_deg 7.366 r_scangle_it 5.908 r_scbond_it 4.016 r_angle_refined_deg 2.61 r_mcangle_it 2.443 r_mcbond_it 1.634 r_nbtor_refined 0.318 r_symmetry_vdw_refined 0.268 r_nbd_refined 0.267 r_symmetry_hbond_refined 0.229 r_xyhbond_nbd_refined 0.203 r_chiral_restr 0.176 r_bond_refined_d 0.033 r_gen_planes_refined 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5009 Nucleic Acid Atoms Solvent Atoms 335 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling CNS phasing