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PpcC, A cytochrome c7 from Geobacter sulfurreducens
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.8 298 4:1 dilution of SaltRx-64 with water (2M ammonium sulfate, 0.08 M sodium acetate, pH 4.6), VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.2 α = 90 b = 79.2 β = 90 c = 67.1 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CUSTOM-MADE 2003-08-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 1.0332 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 50 99 0.057 44 8 19219 19219
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.25 2.33 99 0.314 7.1 7 1902
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.25 15 8938 940 94.32 0.20624 0.20253 0.2076 0.24063 0.2274 RANDOM 33.922
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.85 -0.85 1.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.834 r_scangle_it 4.258 r_scbond_it 2.778 r_mcangle_it 2.3 r_angle_refined_deg 1.904 r_mcbond_it 1.213 r_angle_other_deg 0.977 r_nbd_refined 0.411 r_symmetry_vdw_other 0.299 r_symmetry_vdw_refined 0.273
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.834 r_scangle_it 4.258 r_scbond_it 2.778 r_mcangle_it 2.3 r_angle_refined_deg 1.904 r_mcbond_it 1.213 r_angle_other_deg 0.977 r_nbd_refined 0.411 r_symmetry_vdw_other 0.299 r_symmetry_vdw_refined 0.273 r_xyhbond_nbd_refined 0.271 r_nbd_other 0.235 r_chiral_restr 0.102 r_nbtor_other 0.085 r_symmetry_hbond_refined 0.08 r_metal_ion_refined 0.072 r_bond_refined_d 0.022 r_gen_planes_other 0.014 r_gen_planes_refined 0.011 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 541 Nucleic Acid Atoms Solvent Atoms 44 Heterogen Atoms 134
Software Software Software Name Purpose REFMAC refinement CNS refinement HKL-2000 data reduction HKL-2000 data scaling CNS phasing