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Crystal structure of gene product 6, baseplate protein of bacteriophage T4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 298 1.2 M Ammonium Sulfate, buffered with HEPES, pH 7.0, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.23 61.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.774 α = 90 b = 94.579 β = 90 c = 136.221 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2008-06-02 M SAD 2 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2007-02-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.97948 APS 23-ID-D 2 SYNCHROTRON APS BEAMLINE 23-ID-D 0.97948 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 3.2 50 99.63 0.096 26.9 7.2 16941 16878 2 80.95
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 3.2 3.31 97 0.476 3.9 6.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 3.2 44.856 16878 863 99.63 0.2344 0.2297 0.3216 0.2616 random
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 22.7658 -9.6198 -13.146
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 19.146 f_angle_d 1.215 f_improper_angle_d 0.087 f_bond_d 0.007 f_bond_d_na f_bond_d_prot f_angle_d_na f_angle_d_prot f_angle_deg f_angle_deg_na
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 19.146 f_angle_d 1.215 f_improper_angle_d 0.087 f_bond_d 0.007 f_bond_d_na f_bond_d_prot f_angle_d_na f_angle_d_prot f_angle_deg f_angle_deg_na f_angle_deg_prot f_dihedral_angle_d_na f_dihedral_angle_d_prot f_improper_angle_d_na f_improper_angle_d_prot f_mcbond_it f_mcangle_it f_scbond_it f_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5230 Nucleic Acid Atoms Solvent Atoms 19 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection SHELXCD phasing SHELXE model building PHASER phasing PHENIX refinement HKL-2000 data reduction HKL-2000 data scaling