☰ Navigation Tabs
Crystal structure of primase RepB'
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 298 0.3M ammonium sulfate, 22% (wt/vol) PEG monomethyl ether 2000, 5% (vol/vol) gamma-butyrolactone, 100mM sodium acetate pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.44 49.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.74 α = 90 b = 91.74 β = 90 c = 83.48 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2006-07-04 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 4 2005-11-26 M MAD 3 1 4 1 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.931 ESRF ID14-2 2 SYNCHROTRON ESRF BEAMLINE ID14-2 1.2557, 1.0442, 1.1406, 1.1402 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.98 50 99.8 24819 24774 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.985 2.036 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.99 19.63 24819 24774 1026 100 0.197 0.197 0.195 0.1948 0.232 0.231 RANDOM 36.055
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 -0.03 0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.762 r_dihedral_angle_4_deg 14.981 r_dihedral_angle_3_deg 13.886 r_dihedral_angle_1_deg 5.209 r_scangle_it 2.516 r_scbond_it 1.536 r_angle_refined_deg 1.096 r_mcangle_it 0.838 r_mcbond_it 0.536 r_nbtor_refined 0.282
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.762 r_dihedral_angle_4_deg 14.981 r_dihedral_angle_3_deg 13.886 r_dihedral_angle_1_deg 5.209 r_scangle_it 2.516 r_scbond_it 1.536 r_angle_refined_deg 1.096 r_mcangle_it 0.838 r_mcbond_it 0.536 r_nbtor_refined 0.282 r_nbd_refined 0.182 r_symmetry_vdw_refined 0.169 r_xyhbond_nbd_refined 0.13 r_symmetry_hbond_refined 0.099 r_chiral_restr 0.072 r_bond_refined_d 0.01 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2164 Nucleic Acid Atoms Solvent Atoms 253 Heterogen Atoms 24
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction ADSC data collection XDS data reduction SHELX phasing