☰ Navigation Tabs
Structure of A. Acidocaldarius Cellulase CelA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1CLC PDB ENTRY 1CLC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 50% MPD, 100mM Hepes pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.28 46.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.92 α = 90 b = 129.3 β = 90 c = 49.04 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r Kirkpatrick Baez 2008-07-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.979 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 20 99.8 0.088 14.24 7 50946 50946 2 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.91 98.7 0.594 2.3 6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1CLC 1.8 19.73 50946 48314 2543 100 0.18422 0.18271 0.1872 0.21301 0.2203 RANDOM 18.137
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.239 r_dihedral_angle_3_deg 14.274 r_dihedral_angle_4_deg 11.38 r_dihedral_angle_1_deg 5.731 r_scangle_it 1.953 r_scbond_it 1.237 r_angle_refined_deg 1.091 r_mcangle_it 0.965 r_angle_other_deg 0.871 r_mcbond_it 0.591
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.239 r_dihedral_angle_3_deg 14.274 r_dihedral_angle_4_deg 11.38 r_dihedral_angle_1_deg 5.731 r_scangle_it 1.953 r_scbond_it 1.237 r_angle_refined_deg 1.091 r_mcangle_it 0.965 r_angle_other_deg 0.871 r_mcbond_it 0.591 r_symmetry_vdw_other 0.319 r_nbd_refined 0.203 r_nbd_other 0.192 r_symmetry_vdw_refined 0.184 r_nbtor_refined 0.177 r_symmetry_hbond_refined 0.169 r_xyhbond_nbd_refined 0.113 r_mcbond_other 0.095 r_nbtor_other 0.084 r_metal_ion_refined 0.069 r_chiral_restr 0.065 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4112 Nucleic Acid Atoms Solvent Atoms 320 Heterogen Atoms 18
Software Software Software Name Purpose ADSC data collection PHASER phasing REFMAC refinement XDS data reduction XDS data scaling