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Structure of the C-terminal domain of nsp4 from Feline Coronavirus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 292 PEG 5000, ammonium sulfate, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 3.24 61.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 127.538 α = 90 b = 127.538 β = 90 c = 42.797 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD mirrors 2008-12-12 SAD 2 1 x-ray 100 CCD MARMOSAIC 225 mm CCD mirrors 2008-12-20 SINGLE WAVELENGTH 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X12 0.9777 EMBL/DESY, HAMBURG X12 2 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X12 0.978 EMBL/DESY, HAMBURG X12
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.7 20 99.1 0.053 23.25 6.05 18188 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.75 2.92 96.6 96.6 0.441 3.68 6.36
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.756 19.95 18174 927 99.84 0.243 0.24 0.2391 0.3 0.294 RANDOM 68.225
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.01 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.169 r_dihedral_angle_4_deg 26.861 r_dihedral_angle_3_deg 17.914 r_dihedral_angle_1_deg 15.983 r_angle_refined_deg 1.613 r_scangle_it 1.379 r_scbond_it 0.899 r_mcangle_it 0.507 r_mcbond_it 0.267 r_chiral_restr 0.091
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.169 r_dihedral_angle_4_deg 26.861 r_dihedral_angle_3_deg 17.914 r_dihedral_angle_1_deg 15.983 r_angle_refined_deg 1.613 r_scangle_it 1.379 r_scbond_it 0.899 r_mcangle_it 0.507 r_mcbond_it 0.267 r_chiral_restr 0.091 r_bond_refined_d 0.012 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3581 Nucleic Acid Atoms Solvent Atoms 40 Heterogen Atoms 10
Software Software Software Name Purpose SCALA data scaling BP3 phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction