☰ Navigation Tabs
Crystal structure of putative SnoaL-like polyketide cyclase (YP_001182657.1) from Shewanella putrefaciens CN-32 at 1.44 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.64 293 NANODROP, 17.70% 2-methyl-2,4-pentanediol, 0.1M HEPES pH 6.64, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.67 53.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.24 α = 90 b = 89.94 β = 89.94 c = 94.32 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2009-02-23 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2009-02-18 M SAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837 SSRL BL11-1 2 SYNCHROTRON SSRL BEAMLINE BL11-1 0.97845 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.44 47.14 99.2 0.063 269676 -3 17.07
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.44 1.52 99.1 0.499 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.44 47.14 269639 13577 99.22 0.152 0.151 0.1591 0.174 0.1795 RANDOM 17.385
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.65 0.4 -0.42 1.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.344 r_dihedral_angle_4_deg 17.53 r_dihedral_angle_3_deg 11.898 r_scangle_it 6.122 r_dihedral_angle_1_deg 5.865 r_scbond_it 4.152 r_mcangle_it 2.542 r_angle_refined_deg 1.608 r_mcbond_it 1.576 r_angle_other_deg 0.902
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.344 r_dihedral_angle_4_deg 17.53 r_dihedral_angle_3_deg 11.898 r_scangle_it 6.122 r_dihedral_angle_1_deg 5.865 r_scbond_it 4.152 r_mcangle_it 2.542 r_angle_refined_deg 1.608 r_mcbond_it 1.576 r_angle_other_deg 0.902 r_mcbond_other 0.474 r_chiral_restr 0.102 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9355 Nucleic Acid Atoms Solvent Atoms 1733 Heterogen Atoms 252
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data reduction SHELXD phasing autoSHARP phasing