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Crystal structure of Putative antibiotic biosynthesis monooxygenase (NP_888398.1) from BORDETELLA BRONCHISEPTICA at 2.15 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.64 293 27.5000% polyethylene glycol 6000, 0.1M citric acid pH 4.64, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.15 42.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 103.692 α = 90 b = 55.807 β = 97.28 c = 40.658 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2009-01-18 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91837,0.97966,0.97946 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 29.21 99.8 0.163 0.163 4.372 3.1 12610 20.718
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.15 2.21 99.9 0.619 0.619 1.2 3.1 920
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.15 29.21 12610 617 99.68 0.177 0.174 0.1787 0.236 0.2392 RANDOM 22.559
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.73 0.01 1.17 -0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.267 r_dihedral_angle_3_deg 15.206 r_dihedral_angle_4_deg 10.429 r_scangle_it 6.849 r_dihedral_angle_1_deg 6.093 r_scbond_it 5.381 r_mcangle_it 3.084 r_mcbond_it 2.318 r_angle_refined_deg 1.626 r_angle_other_deg 1.008
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.267 r_dihedral_angle_3_deg 15.206 r_dihedral_angle_4_deg 10.429 r_scangle_it 6.849 r_dihedral_angle_1_deg 6.093 r_scbond_it 5.381 r_mcangle_it 3.084 r_mcbond_it 2.318 r_angle_refined_deg 1.626 r_angle_other_deg 1.008 r_mcbond_other 0.72 r_symmetry_vdw_other 0.311 r_symmetry_vdw_refined 0.283 r_symmetry_hbond_refined 0.283 r_nbd_other 0.199 r_nbd_refined 0.191 r_xyhbond_nbd_refined 0.186 r_nbtor_refined 0.178 r_chiral_restr 0.097 r_nbtor_other 0.084 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1599 Nucleic Acid Atoms Solvent Atoms 145 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction SHELXD phasing autoSHARP phasing