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Crystal structure of Putative phosphatase (DUF442) (YP_001181608.1) from SHEWANELLA PUTREFACIENS CN-32 at 1.60 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.5 277 1.26M (NH4)2SO4, 0.20M NaCl, 0.1M Acetate pH 4.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.88 57.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 111.223 α = 90 b = 111.223 β = 90 c = 66.38 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2009-02-18 M SAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 42.64 99.9 0.068 0.117 13.6 3.7 106820 -3 14.762
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.69 99.9 100 0.551 0.751 2.3 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.6 42.64 106820 5324 99.91 0.153 0.152 0.18 0.1672 RANDOM 17.805
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.33 0.33 -0.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.201 r_dihedral_angle_4_deg 15.702 r_dihedral_angle_3_deg 11.202 r_scangle_it 6.157 r_dihedral_angle_1_deg 5.403 r_scbond_it 4.19 r_mcangle_it 2.505 r_mcbond_it 1.603 r_angle_refined_deg 1.474 r_angle_other_deg 0.944
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.201 r_dihedral_angle_4_deg 15.702 r_dihedral_angle_3_deg 11.202 r_scangle_it 6.157 r_dihedral_angle_1_deg 5.403 r_scbond_it 4.19 r_mcangle_it 2.505 r_mcbond_it 1.603 r_angle_refined_deg 1.474 r_angle_other_deg 0.944 r_mcbond_other 0.468 r_chiral_restr 0.086 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4934 Nucleic Acid Atoms Solvent Atoms 937 Heterogen Atoms 115
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing