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Crystal Structure of Mg-ATPase Nucleotide binding domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 0.1M HEPES, 2% PEG 400, 2M ammonium sulfate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.93 58.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.62 α = 90 b = 99.62 β = 90 c = 46.24 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2008-05-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-2 1.0379 MAX II I911-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.53 27.63 94.7 0.042 28.1 7.5 35560 33678 -3 19.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.53 1.61 70 0.206 10.1 6 5643
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.6 20 31298 29519 1556 100 0.19214 0.1907 0.21981 0.2317 RANDOM 18.271
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.38 0.38 -0.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.44 r_dihedral_angle_4_deg 15.728 r_dihedral_angle_3_deg 12.469 r_dihedral_angle_1_deg 6.078 r_scangle_it 3.783 r_scbond_it 2.283 r_mcangle_it 1.432 r_angle_refined_deg 1.158 r_mcbond_it 0.88 r_nbtor_refined 0.297
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.44 r_dihedral_angle_4_deg 15.728 r_dihedral_angle_3_deg 12.469 r_dihedral_angle_1_deg 6.078 r_scangle_it 3.783 r_scbond_it 2.283 r_mcangle_it 1.432 r_angle_refined_deg 1.158 r_mcbond_it 0.88 r_nbtor_refined 0.297 r_nbd_refined 0.198 r_symmetry_vdw_refined 0.158 r_symmetry_hbond_refined 0.114 r_xyhbond_nbd_refined 0.112 r_chiral_restr 0.079 r_bond_refined_d 0.009 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1313 Nucleic Acid Atoms Solvent Atoms 272 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement