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Crystallographic Ab Initio protein solution far below atomic resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 293 2.4M (NH4)2SO4, 0.1M citric acid, pH6.0, vapor diffusion, sitting drop, temperature 293K, VAPOR DIFFUSION, SITTING DROP
Crystal Properties Matthews coefficient Solvent content 1.77 30.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.39 α = 90 b = 65.75 β = 109.58 c = 38.19 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD BRUKER SMART 6000 MULTI-LAYER INCOATEC OPTICS 2008-08-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE MACSCIENCE 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 35.98 99.6 0.0906 20.21 16.7 12855 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.95 2.04 96.8 2.45 1.75 1786
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION AB INITIO THROUGHOUT 1.95 35.98 2 24546 12832 626 99.74 0.198 0.195 0.2034 0.241 0.243 RANDOM 27.144
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.54 -0.69 -0.12 0.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.456 r_dihedral_angle_4_deg 18.73 r_dihedral_angle_3_deg 14.344 r_dihedral_angle_1_deg 6.089 r_scangle_it 5.476 r_scbond_it 3.297 r_mcangle_it 2.172 r_angle_refined_deg 1.848 r_mcbond_it 1.171 r_angle_other_deg 1.058
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.456 r_dihedral_angle_4_deg 18.73 r_dihedral_angle_3_deg 14.344 r_dihedral_angle_1_deg 6.089 r_scangle_it 5.476 r_scbond_it 3.297 r_mcangle_it 2.172 r_angle_refined_deg 1.848 r_mcbond_it 1.171 r_angle_other_deg 1.058 r_mcbond_other 0.32 r_chiral_restr 0.106 r_bond_refined_d 0.023 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1641 Nucleic Acid Atoms Solvent Atoms 29 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction APEX data collection SAINT data reduction TWINABS data scaling Arcimboldo phasing PHASER phasing SHELXE model building