☰ Navigation Tabs
Open crystal structure of cyclohexanone monooxygenase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1W4X PDB entry 1W4X
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.5 0.2M magnesium acetate tetrahydrate, 0.1M sodium cacodylate pH 6.5 and 20% PEG 8000, VAPOR DIFFUSION
Crystal Properties Matthews coefficient Solvent content 2.44 49.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.279 α = 90 b = 66.958 β = 90 c = 135.996 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 2004-09-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X6A NSLS X6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 20 99.35 27421 27243
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.317 96.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1W4X 2.2 20 27421 27243 3056 99.35 0.18767 0.18217 0.1829 0.23666 0.2353 RANDOM 35.292
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.04 0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.672 r_dihedral_angle_4_deg 17.534 r_dihedral_angle_3_deg 15.896 r_dihedral_angle_1_deg 6.376 r_scangle_it 2.72 r_scbond_it 1.69 r_angle_refined_deg 1.325 r_mcangle_it 1.081 r_mcbond_it 0.649 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.672 r_dihedral_angle_4_deg 17.534 r_dihedral_angle_3_deg 15.896 r_dihedral_angle_1_deg 6.376 r_scangle_it 2.72 r_scbond_it 1.69 r_angle_refined_deg 1.325 r_mcangle_it 1.081 r_mcbond_it 0.649 r_nbtor_refined 0.307 r_symmetry_vdw_refined 0.254 r_symmetry_hbond_refined 0.236 r_nbd_refined 0.194 r_xyhbond_nbd_refined 0.153 r_chiral_restr 0.092 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4027 Nucleic Acid Atoms Solvent Atoms 247 Heterogen Atoms 101
Software Software Software Name Purpose REFMAC refinement