Crystallization
| Crystalization Experiments |
|---|
| ID | Method | pH | Temperature | Details |
|---|
| 1 | hanging drop | | | hanging drop |
| Crystal Properties |
|---|
| Matthews coefficient | Solvent content |
|---|
| 2.71 | 54.57 |
Crystal Data
| Unit Cell |
|---|
| Length ( Å ) | Angle ( ˚ ) |
|---|
| a = 103.073 | α = 90 |
| b = 103.073 | β = 90 |
| c = 72.066 | γ = 120 |
| Symmetry |
|---|
| Space Group | P 31 2 1 |
|---|
Diffraction
| Diffraction Experiment |
|---|
| ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol |
|---|
| 1 | 1 | x-ray | 100 | IMAGE PLATE | RIGAKU RAXIS IV | yale mirrors | 2008-08-18 | | SINGLE WAVELENGTH |
| Radiation Source |
|---|
| ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
|---|
| 1 | ROTATING ANODE | RIGAKU RU200 | 1.5418 | | |
Data Collection
| Overall |
|---|
| ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot |
|---|
| 1 | 1.7 | 40 | 99.3 | 0.076 | 17.191 | 5.3 | | 48712 | | | |
| Highest Resolution Shell |
|---|
| ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | R Merge I (Observed) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) |
|---|
| 1 | 1.7 | 1.76 | 96.9 | | 0.476 | | 3.3 | 4670 |
Refinement
| Statistics |
|---|
| Diffraction ID | Structure Solution Method | Cross Validation method | Resolution (High) | Resolution (Low) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (Observed) | R-Work (Depositor) | R-Work (DCC) | R-Free (Depositor) | R-Free (DCC) | R-Free Selection Details | Mean Isotropic B |
|---|
| X-RAY DIFFRACTION | | THROUGHOUT | 1.7 | 33.41 | 48389 | 1507 | 99.05 | 0.185 | 0.184 | 0.1835 | 0.238 | 0.2333 | RANDOM | 32.128 |
| Temperature Factor Modeling |
|---|
| Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] |
|---|
| -1.83 | -0.92 | | -1.83 | | 2.75 |
| RMS Deviations |
|---|
| Key | Refinement Restraint Deviation |
|---|
| r_dihedral_angle_2_deg | 34.895 |
| r_dihedral_angle_4_deg | 15.936 |
| r_dihedral_angle_3_deg | 13.22 |
| r_dihedral_angle_1_deg | 5.454 |
| r_scangle_it | 4.839 |
| r_scbond_it | 2.862 |
| r_mcangle_it | 1.816 |
| r_angle_refined_deg | 1.533 |
| r_mcbond_it | 0.986 |
| r_chiral_restr | 0.112 |
| RMS Deviations |
|---|
| Key | Refinement Restraint Deviation |
|---|
| r_dihedral_angle_2_deg | 34.895 |
| r_dihedral_angle_4_deg | 15.936 |
| r_dihedral_angle_3_deg | 13.22 |
| r_dihedral_angle_1_deg | 5.454 |
| r_scangle_it | 4.839 |
| r_scbond_it | 2.862 |
| r_mcangle_it | 1.816 |
| r_angle_refined_deg | 1.533 |
| r_mcbond_it | 0.986 |
| r_chiral_restr | 0.112 |
| r_bond_refined_d | 0.016 |
| r_gen_planes_refined | 0.009 |
| Non-Hydrogen Atoms Used in Refinement |
|---|
| Non-Hydrogen Atoms | Number |
|---|
| Protein Atoms | 2801 |
| Nucleic Acid Atoms | |
| Solvent Atoms | 364 |
| Heterogen Atoms | |
Software
| Software |
|---|
| Software Name | Purpose |
|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
