Crystallization
| Crystalization Experiments |
|---|
| ID | Method | pH | Temperature | Details |
|---|
| 1 | hanging drop | | | hanging drop |
| Crystal Properties |
|---|
| Matthews coefficient | Solvent content |
|---|
| 2.76 | 55.43 |
Crystal Data
| Unit Cell |
|---|
| Length ( Å ) | Angle ( ˚ ) |
|---|
| a = 103.266 | α = 90 |
| b = 103.266 | β = 90 |
| c = 73.389 | γ = 120 |
| Symmetry |
|---|
| Space Group | P 31 2 1 |
|---|
Diffraction
| Diffraction Experiment |
|---|
| ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol |
|---|
| 1 | 1 | x-ray | 100 | IMAGE PLATE | RIGAKU RAXIS IV | yale mirrors | 2008-08-18 | | SINGLE WAVELENGTH |
| Radiation Source |
|---|
| ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
|---|
| 1 | ROTATING ANODE | RIGAKU RU200 | 1.5418 | | |
Data Collection
| Overall |
|---|
| ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot |
|---|
| 1 | 2 | 40 | 100 | 0.084 | 15.195 | 5.9 | | 31077 | | | |
| Highest Resolution Shell |
|---|
| ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | R Merge I (Observed) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) |
|---|
| 1 | 2 | 2.07 | 100 | | 0.585 | | 5.8 | 3068 |
Refinement
| Statistics |
|---|
| Diffraction ID | Structure Solution Method | Cross Validation method | Resolution (High) | Resolution (Low) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (Observed) | R-Work (Depositor) | R-Free (Depositor) | R-Free (DCC) | R-Free Selection Details | Mean Isotropic B |
|---|
| X-RAY DIFFRACTION | | THROUGHOUT | 2 | 30.7 | 30828 | 1257 | 99.86 | 0.196 | 0.194 | 0.24 | 0.2555 | RANDOM | 41.404 |
| Temperature Factor Modeling |
|---|
| Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] |
|---|
| -1.76 | -0.88 | | -1.76 | | 2.64 |
| RMS Deviations |
|---|
| Key | Refinement Restraint Deviation |
|---|
| r_dihedral_angle_2_deg | 35.363 |
| r_dihedral_angle_4_deg | 17.872 |
| r_dihedral_angle_3_deg | 16.754 |
| r_scangle_it | 5.97 |
| r_dihedral_angle_1_deg | 5.921 |
| r_scbond_it | 3.642 |
| r_mcangle_it | 2.302 |
| r_angle_refined_deg | 1.977 |
| r_mcbond_it | 1.351 |
| r_chiral_restr | 0.142 |
| RMS Deviations |
|---|
| Key | Refinement Restraint Deviation |
|---|
| r_dihedral_angle_2_deg | 35.363 |
| r_dihedral_angle_4_deg | 17.872 |
| r_dihedral_angle_3_deg | 16.754 |
| r_scangle_it | 5.97 |
| r_dihedral_angle_1_deg | 5.921 |
| r_scbond_it | 3.642 |
| r_mcangle_it | 2.302 |
| r_angle_refined_deg | 1.977 |
| r_mcbond_it | 1.351 |
| r_chiral_restr | 0.142 |
| r_bond_refined_d | 0.026 |
| r_gen_planes_refined | 0.012 |
| Non-Hydrogen Atoms Used in Refinement |
|---|
| Non-Hydrogen Atoms | Number |
|---|
| Protein Atoms | 2805 |
| Nucleic Acid Atoms | |
| Solvent Atoms | 180 |
| Heterogen Atoms | |
Software
| Software |
|---|
| Software Name | Purpose |
|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
