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The crystal structure of human ABL2 in complex with GLEEVEC
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FPU 1FPU.pdb
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 277 20% PEG3350, 0.1M citrate, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.88 57.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.46 α = 90 b = 99.44 β = 90 c = 87.81 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR225 2009-01-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.88000 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 43.9 99.3 0.086 0.086 12.8 4.8 24490
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.16 95.5 0.445 0.445 3.2 3.6 12308
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1FPU.pdb 2.05 43.9 23225 23225 1244 99.24 0.19135 0.19135 0.18942 0.2033 0.22644 0.2386 RANDOM 16.411
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.79 -1.5 -2.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.158 r_dihedral_angle_3_deg 14.708 r_dihedral_angle_4_deg 12.788 r_scangle_it 8.238 r_scbond_it 7.789 r_dihedral_angle_1_deg 6.819 r_mcangle_it 5.869 r_mcbond_it 4.535 r_mcbond_other 1.836 r_angle_refined_deg 1.474
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.158 r_dihedral_angle_3_deg 14.708 r_dihedral_angle_4_deg 12.788 r_scangle_it 8.238 r_scbond_it 7.789 r_dihedral_angle_1_deg 6.819 r_mcangle_it 5.869 r_mcbond_it 4.535 r_mcbond_other 1.836 r_angle_refined_deg 1.474 r_angle_other_deg 1.034 r_chiral_restr 0.085 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2167 Nucleic Acid Atoms Solvent Atoms 149 Heterogen Atoms 74
Software Software Software Name Purpose MAR345 data collection PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling