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Crystal structure of a putative translation initiation inhibitor from Salmonella typhimurium
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 294 10% PEG 6K, 2.0M sodium chloride, pH 7.0, vapor diffusion, temperature 294K
Crystal Properties Matthews coefficient Solvent content 4.01 69.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.39 α = 90 b = 100.39 β = 90 c = 131.939 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2009-03-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.97958 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 22.875 99.9 0.089 0.089 33.3 28.7 24036 24012 58
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.64 100 0.436 0.436 8.7 29.1 3436
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.5 20 23928 23823 1223 99.56 0.233 0.232 0.2366 0.26 0.2628 RANDOM 52.883
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.97 0.97 -1.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.525 r_dihedral_angle_3_deg 18.044 r_dihedral_angle_4_deg 17.56 r_dihedral_angle_1_deg 6.207 r_scangle_it 3.21 r_scbond_it 2.228 r_angle_refined_deg 1.489 r_mcangle_it 1.474 r_angle_other_deg 0.946 r_mcbond_it 0.937
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.525 r_dihedral_angle_3_deg 18.044 r_dihedral_angle_4_deg 17.56 r_dihedral_angle_1_deg 6.207 r_scangle_it 3.21 r_scbond_it 2.228 r_angle_refined_deg 1.489 r_mcangle_it 1.474 r_angle_other_deg 0.946 r_mcbond_it 0.937 r_symmetry_vdw_other 0.258 r_symmetry_hbond_refined 0.23 r_nbd_refined 0.214 r_nbd_other 0.199 r_symmetry_vdw_refined 0.193 r_nbtor_refined 0.181 r_mcbond_other 0.171 r_xyhbond_nbd_refined 0.148 r_chiral_restr 0.091 r_nbtor_other 0.089 r_bond_refined_d 0.017 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2642 Nucleic Acid Atoms Solvent Atoms 15 Heterogen Atoms 6
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction SHELXCD phasing SHELXE model building