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AmpC beta-lactamase in complex with Fragment-based Inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.7 298 1.7M potassium phosphate, pH 8.7, VAPOR DIFFUSION, HANGING DROP, temperature 294K, vapor diffusion, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.57 52.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 118.447 α = 90 b = 77.951 β = 115.76 c = 97.881 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2006-05-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 98.8 0.063 3.8 62779
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 1.97 97.8 0.374 3.7 6185
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.9 30 62685 3184 98.64 0.207 0.205 0.2089 0.247 0.2488 RANDOM 25.94
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.28 0.37 0.21 -0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.733 r_dihedral_angle_4_deg 14.979 r_dihedral_angle_3_deg 13.644 r_dihedral_angle_1_deg 5.899 r_scangle_it 1.673 r_angle_refined_deg 1.284 r_scbond_it 1.157 r_angle_other_deg 0.928 r_mcangle_it 0.803 r_mcbond_it 0.707
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.733 r_dihedral_angle_4_deg 14.979 r_dihedral_angle_3_deg 13.644 r_dihedral_angle_1_deg 5.899 r_scangle_it 1.673 r_angle_refined_deg 1.284 r_scbond_it 1.157 r_angle_other_deg 0.928 r_mcangle_it 0.803 r_mcbond_it 0.707 r_symmetry_vdw_refined 0.258 r_symmetry_hbond_refined 0.235 r_symmetry_vdw_other 0.223 r_nbd_refined 0.196 r_nbd_other 0.179 r_nbtor_refined 0.174 r_xyhbond_nbd_refined 0.131 r_chiral_restr 0.093 r_mcbond_other 0.089 r_nbtor_other 0.082 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_xyhbond_nbd_other 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5615 Nucleic Acid Atoms Solvent Atoms 695 Heterogen Atoms 85
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction