☰ Navigation Tabs
Crystal structure of the binary complex between HLA-A2 and HCMV NLV-T8V peptide variant
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 9-20% PEG 6000, 0.1M tri-Na Citrate, 0-0.1M NaCl, pH 6.5, vapor diffusion, hanging drop, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.57 52.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.001 α = 90 b = 81.036 β = 114 c = 57.32 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2008-05-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.933 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 96.5 0.026 0.026 36.3 3.5 28155 26.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.17 73.1 0.064 11.7 11.7 1.6 1817
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.1 14.88 28155 25312 2576 97.12 0.192 0.192 0.19 0.1954 0.247 RANDOM 27.322
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 -0.07 -0.07 0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.746 r_dihedral_angle_4_deg 14.813 r_dihedral_angle_3_deg 14.143 r_dihedral_angle_1_deg 6.015 r_scangle_it 2.437 r_scbond_it 1.615 r_angle_refined_deg 1.167 r_mcangle_it 1.134 r_mcbond_it 0.674 r_nbtor_refined 0.293
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.746 r_dihedral_angle_4_deg 14.813 r_dihedral_angle_3_deg 14.143 r_dihedral_angle_1_deg 6.015 r_scangle_it 2.437 r_scbond_it 1.615 r_angle_refined_deg 1.167 r_mcangle_it 1.134 r_mcbond_it 0.674 r_nbtor_refined 0.293 r_nbd_refined 0.194 r_symmetry_vdw_refined 0.167 r_symmetry_hbond_refined 0.162 r_xyhbond_nbd_refined 0.121 r_chiral_restr 0.085 r_bond_refined_d 0.01 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3176 Nucleic Acid Atoms Solvent Atoms 174 Heterogen Atoms
Software Software Software Name Purpose XSCALE data scaling AMoRE phasing REFMAC refinement PDB_EXTRACT data extraction ADSC data collection XDS data reduction