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A Bulky Rhodium Complex Bound to an Adenosine-Adenosine DNA Mismatch
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 298 20 mM sodium cacodylate, 6 mM spermine, 4HCl, 40 mM KCl, 5% MPD, pH 7, VAPOR DIFFUSION
Crystal Properties Matthews coefficient Solvent content 2.98 58.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.02 α = 90 b = 39.02 β = 90 c = 57.42 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV mirrors M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 28.7 98.7 0.061 19.1 6.5 4469
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.9 97.4 0.782 2.3 6.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 27.59 4190 198 98.21 0.18471 0.18328 0.1882 0.21251 0.2013 RANDOM 21.081
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.36 0.36 -0.71
RMS Deviations Key Refinement Restraint Deviation r_angle_refined_deg 4.281 r_scangle_it 3.21 r_scbond_it 2.125 r_angle_other_deg 1.468 r_symmetry_vdw_other 0.359 r_nbtor_refined 0.289 r_nbd_other 0.249 r_xyhbond_nbd_refined 0.242 r_symmetry_hbond_refined 0.222 r_nbd_refined 0.2
RMS Deviations Key Refinement Restraint Deviation r_angle_refined_deg 4.281 r_scangle_it 3.21 r_scbond_it 2.125 r_angle_other_deg 1.468 r_symmetry_vdw_other 0.359 r_nbtor_refined 0.289 r_nbd_other 0.249 r_xyhbond_nbd_refined 0.242 r_symmetry_hbond_refined 0.222 r_nbd_refined 0.2 r_chiral_restr 0.198 r_symmetry_vdw_refined 0.168 r_nbtor_other 0.112 r_bond_refined_d 0.032 r_gen_planes_refined 0.025 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_dihedral_angle_1_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 260 Solvent Atoms 63 Heterogen Atoms 92
Software Software Software Name Purpose Blu-Ice data collection SHELXD phasing REFMAC refinement MOSFLM data reduction SCALA data scaling