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The Crystal Structure of a Dihydroorotase from Staphylococcus aureus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 298 2M Ammonium Sulphate, 5% Iso-propanol, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.4 48.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.217 α = 88.33 b = 55.229 β = 76.56 c = 85.647 γ = 76.97
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Mirrors 2009-02-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 0.97923 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 30 97.5 0.083 3.8 54638 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.88 94.1 0.652 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 30 54638 2934 97.77 0.19117 0.18869 0.1911 0.23673 0.2371 RANDOM 26.698
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.1 -0.36 -0.34 1.42 0.51 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.733 r_dihedral_angle_4_deg 17.689 r_dihedral_angle_3_deg 12.131 r_dihedral_angle_1_deg 4.492 r_scangle_it 2.871 r_scbond_it 2.036 r_angle_refined_deg 1.436 r_mcangle_it 0.986 r_mcbond_it 0.742 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.733 r_dihedral_angle_4_deg 17.689 r_dihedral_angle_3_deg 12.131 r_dihedral_angle_1_deg 4.492 r_scangle_it 2.871 r_scbond_it 2.036 r_angle_refined_deg 1.436 r_mcangle_it 0.986 r_mcbond_it 0.742 r_nbtor_refined 0.306 r_symmetry_vdw_refined 0.244 r_nbd_refined 0.203 r_metal_ion_refined 0.192 r_xyhbond_nbd_refined 0.155 r_symmetry_metal_ion_refined 0.123 r_chiral_restr 0.095 r_symmetry_hbond_refined 0.088 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6459 Nucleic Acid Atoms Solvent Atoms 478 Heterogen Atoms 9
Software Software Software Name Purpose BLU-MAX data collection PHENIX model building REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHENIX phasing