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Crystal structure of NTF2-superfamily protein with unknown function (NP_977240.1) from BACILLUS CEREUS ATCC 10987 at 1.25 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.29 277 33.8000% polyethylene glycol 4000, 0.2000M sodium acetate, 0.1M TRIS pH 8.29, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.41 48.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.09 α = 90 b = 47.14 β = 90 c = 151.79 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2008-11-15 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91162,0.97862 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.25 29.566 96.1 0.041 11.63 81747 -3 10.01
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.25 1.29 82.5 0.469 1.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.25 29.566 81659 4091 98.96 0.135 0.133 0.167 0.1683 RANDOM 13.625
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.08 0.12 -0.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.722 r_dihedral_angle_4_deg 13.478 r_dihedral_angle_3_deg 11.095 r_sphericity_free 9.093 r_dihedral_angle_1_deg 6.203 r_scangle_it 6.066 r_scbond_it 4.543 r_sphericity_bonded 4.436 r_mcangle_it 3.164 r_mcbond_it 2.362
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.722 r_dihedral_angle_4_deg 13.478 r_dihedral_angle_3_deg 11.095 r_sphericity_free 9.093 r_dihedral_angle_1_deg 6.203 r_scangle_it 6.066 r_scbond_it 4.543 r_sphericity_bonded 4.436 r_mcangle_it 3.164 r_mcbond_it 2.362 r_rigid_bond_restr 1.991 r_mcbond_other 1.648 r_angle_refined_deg 1.54 r_angle_other_deg 0.893 r_nbd_refined 0.267 r_symmetry_vdw_refined 0.265 r_symmetry_vdw_other 0.224 r_symmetry_hbond_refined 0.192 r_nbd_other 0.191 r_nbtor_refined 0.186 r_xyhbond_nbd_refined 0.164 r_chiral_restr 0.102 r_nbtor_other 0.088 r_metal_ion_refined 0.055 r_bond_refined_d 0.015 r_gen_planes_refined 0.009 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2350 Nucleic Acid Atoms Solvent Atoms 540 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing